Tag
Local Alignment Algorithms
Local alignment algorithm used by localAlignment.
Values
SmithWaterman
Triggers a Smith Waterman local alignment algorithm.
SmithWatermanClump
Local alignment algorithm with "declumping" by Waterman and Eggert.
SmithWatermanIsland
Local alignment algorithm finding all "islands".
SeqAn - Sequence Analysis Library - www.seqan.de